Recently I was tasked with investigating slippage between master and slave in a standard replication setup. The client was using Maatkit’s mk-table-checksum to check his slave data was indeed a fair copy of that of the master.
Slow Query Log analyzes tools
MySQL has simple but quite handy feature – slow query log, which allows you to log all queries which took over define number of seconds to execute. There is also an option to enable logging queries which do not use indexes even if they take less time (–log-queries-not-using-indexes) Slow query log is great to spot [...]

